Package: ctgt 2.0.1
ctgt: Closed Testing with Globaltest for Pathway Analysis
A shortcut procedure is proposed to implement closed testing for large-scale multiple testings, especially with the global test. This shortcut is asymptotically equivalent to closed testing and post hoc. Users could detect any possible sets of features or pathways with family-wise error rate controlled. The global test is powerful to detect associations between a group of features and an outcome of interest.
Authors:
ctgt_2.0.1.tar.gz
ctgt_2.0.1.zip(r-4.5)ctgt_2.0.1.zip(r-4.4)ctgt_2.0.1.zip(r-4.3)
ctgt_2.0.1.tgz(r-4.4-x86_64)ctgt_2.0.1.tgz(r-4.4-arm64)ctgt_2.0.1.tgz(r-4.3-x86_64)ctgt_2.0.1.tgz(r-4.3-arm64)
ctgt_2.0.1.tar.gz(r-4.5-noble)ctgt_2.0.1.tar.gz(r-4.4-noble)
ctgt_2.0.1.tgz(r-4.4-emscripten)ctgt_2.0.1.tgz(r-4.3-emscripten)
ctgt.pdf |ctgt.html✨
ctgt/json (API)
| # Install 'ctgt' in R: |
| install.packages('ctgt', repos = c('https://nxu312.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 10 months agofrom:c46c9554f1. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 14 2024 |
| R-4.5-win-x86_64 | OK | Oct 14 2024 |
| R-4.5-linux-x86_64 | OK | Oct 14 2024 |
| R-4.4-win-x86_64 | OK | Oct 14 2024 |
| R-4.4-mac-x86_64 | OK | Oct 14 2024 |
| R-4.4-mac-aarch64 | OK | Oct 14 2024 |
| R-4.3-win-x86_64 | OK | Oct 14 2024 |
| R-4.3-mac-x86_64 | OK | Oct 14 2024 |
| R-4.3-mac-aarch64 | OK | Oct 14 2024 |
Exports:actgtactgt_itcriticalvaluediscoveriesgetLgt2pvtacmaxtactrue
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| 'Closed Testing with Globaltest for Pathway Analysis' | ctgt-package ctgt |
| The 1-alpha quantile of globaltest | criticalvalue |
| Approximated Closed Testing with Global Test | actgt |
| 'Internal Functions (ctgt)' | actgt_it tacmax tactrue |
| The majorizing vector | getL |
| 'Non-standardized globaltest' | gt2 |
| p-value of globaltest | pv |
| True discoveries | discoveries |
